../../tmp/servers/virsirnadb/445106108
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1730 | 1 | ggcaacattgcaagacatt | 19 | |
| NC_001357.1 | Human papillomavirus - 18, complete genome | 604 | ................... | 622 | 100 |
| NC_001357.1 | Human papillomavirus - 18, complete genome | 203 | ____.t...........g. | 217 | 68 |
| NC_001357.1 | Human papillomavirus - 18, complete genome | 6246 | ____...........t.c. | 6260 | 68 |
| NC_001357.1 | Human papillomavirus - 18, complete genome | 175 | _____..c.........._ | 187 | 63 |
| NC_001357.1 | Human papillomavirus - 18, complete genome | 3105 | ____...c.........__ | 3117 | 63 |
| NC_004197.1 | Bovine papillomavirus 3, complete genome | 4718 | ....ga...t......... | 4736 | 84 |
| NC_004197.1 | Bovine papillomavirus 3, complete genome | 4992 | ..........a._______ | 5003 | 57 |
| NC_008298.1 | Rousettus aegyptiacus papillomavirus type 1, complete genome | 7586 | ____.............c. | 7572 | 73 |
| NC_008582.1 | Old World harvest mouse papillomavirus, complete genome | 1259 | ___...c..........._ | 1245 | 73 |
| NC_008582.1 | Old World harvest mouse papillomavirus, complete genome | 5942 | ___.........g..____ | 5953 | 57 |
| NC_011531.1 | Chelonia mydas papillomavirus 1, complete genome | 674 | __.............____ | 686 | 68 |
| NC_015267.1 | Camelus dromedarius papillomavirus type 1, complete genome | 4476 | ____.............__ | 4488 | 68 |
| NC_015267.1 | Camelus dromedarius papillomavirus type 1, complete genome | 1279 | _..t.ac.........___ | 1265 | 63 |
| NC_001619.1 | Canine oral papillomavirus, complete genome | 5973 | _____...........c.. | 5986 | 68 |
| NC_001619.1 | Canine oral papillomavirus, complete genome | 605 | ___.g.........t.___ | 593 | 57 |
| NC_010107.1 | Bandicoot papillomatosis carcinomatosis virus type 1, complete genome | 6498 | _____..........a... | 6485 | 68 |
| NC_006951.1 | Erethizon dorsatum papillomavirus type 1, complete genome | 4761 | _____....t......... | 4774 | 68 |
| NC_001576.1 | Human papillomavirus type 10, complete genome | 6586 | _______............ | 6597 | 63 |
| NC_001576.1 | Human papillomavirus type 10, complete genome | 3020 | ______.........a.g. | 3032 | 57 |
| NC_010739.1 | Ursus maritimus papillomavirus 1, complete genome | 6230 | _______............ | 6241 | 63 |
| NC_001356.1 | Human papillomavirus - 1, complete genome | 3882 | _.........t..c.a.._ | 3898 | 73 |
| NC_001694.1 | Human papillomavirus - 61, complete genome | 7914 | __...ag..........g. | 7898 | 73 |
| NC_001694.1 | Human papillomavirus - 61, complete genome | 2987 | ____.........ac..__ | 2999 | 57 |
| NC_001457.1 | Human papillomavirus type 4, complete genome | 617 | ___..g..........c._ | 603 | 68 |
| NC_001583.1 | Human papillomavirus type 26, complete genome | 3712 | ____.........t...a. | 3698 | 68 |
| NC_001583.1 | Human papillomavirus type 26, complete genome | 1158 | _____.g..........._ | 1170 | 63 |
| NC_001541.1 | Cottontail rabbit papillomavirus, complete genome | 6689 | .c...........______ | 6701 | 63 |
| NC_001541.1 | Cottontail rabbit papillomavirus, complete genome | 6460 | ___.........g.c..g. | 6475 | 68 |
| NC_001541.1 | Cottontail rabbit papillomavirus, complete genome | 4404 | ...tg..cca......... | 4422 | 73 |
| NC_001586.1 | Human papillomavirus type 32, complete genome | 2996 | ____...........g.__ | 3008 | 63 |
| NC_001586.1 | Human papillomavirus type 32, complete genome | 1441 | _.........tt.._____ | 1453 | 57 |
| NC_010329.1 | Human papillomavirus type 88, complete genome | 2185 | ___.c..........t.c. | 2200 | 68 |
| NC_010329.1 | Human papillomavirus type 88, complete genome | 5955 | _______..........__ | 5964 | 52 |
| NC_011530.1 | Caretta caretta papillomavirus 1, complete genome | 2029 | __.........t..ta.._ | 2014 | 68 |
| NC_012213.1 | Human papillomavirus type 108, complete genome | 6743 | _...ca.........t.__ | 6728 | 68 |
| NC_010817.1 | Bandicoot papillomatosis carcinomatosis virus type 2, complete genome | 6477 | _____..........a.c. | 6464 | 63 |
| NC_001522.1 | Bovine papillomavirus - 1, complete genome | 4336 | ____.g..........___ | 4325 | 57 |
| NC_001523.1 | Deer papillomavirus, complete genome | 1528 | ..........a._______ | 1517 | 57 |
| NC_001524.1 | European elk papillomavirus, complete genome | 668 | _____.........g..__ | 657 | 57 |
| NC_004500.1 | Human papillomavirus type 92, complete genome | 2592 | _____..c.........__ | 2603 | 57 |
| NC_014143.1 | Bettongia penicillata papillomavirus 1, complete genome | 5021 | ____..c.........___ | 5032 | 57 |
| NC_001354.1 | Human papillomavirus type 41, complete genome | 3014 | _____..........a.__ | 3025 | 57 |
| NC_007612.1 | Bovine papillomavirus 7, complete genome | 6051 | ____..t.........___ | 6040 | 57 |
| NC_007612.1 | Bovine papillomavirus 7, complete genome | 6172 | _____..........____ | 6181 | 52 |
| NC_001690.1 | Human papillomavirus type 48, complete genome | 3382 | _______..........__ | 3391 | 52 |
| NC_001838.1 | Common chimpanzee papillomavirus 1, complete genome | 3273 | ___..........______ | 3282 | 52 |
| NC_001838.1 | Common chimpanzee papillomavirus 1, complete genome | 596 | .t.t.........______ | 608 | 57 |
| NC_004195.1 | Bovine papillomavirus type 5, complete genome | 5434 | _______..........__ | 5443 | 52 |
| NC_004195.1 | Bovine papillomavirus type 5, complete genome | 2093 | ______.a.........g. | 2081 | 57 |
| NC_013117.1 | Francolinus leucoscepus papillomavirus 1, complete genome | 5979 | ___..........______ | 5988 | 52 |
| NC_013237.1 | Canine papillomavirus 6, complete genome | 1338 | ______..........___ | 1347 | 52 |
| NC_003348.1 | Phocoena spinipinnis papillomavirus, complete genome | 5052 | __.........._______ | 5061 | 52 |
| NC_004765.1 | Felis domesticus papillomavirus type 1, complete genome | 4665 | _.t..a.aa........._ | 4681 | 68 |
| NC_012123.1 | Equine papillomavirus 2, complete genome | 7223 | ...ttt.........t.__ | 7207 | 68 |
| NC_008032.1 | Capra hircus papillomavirus type 1, complete genome | 5282 | .t.t.........a.____ | 5268 | 63 |
| NC_008184.1 | Tursiops truncatus papillomavirus 2, complete genome | 1247 | ____.t..aa......... | 1261 | 63 |
| NC_008184.1 | Tursiops truncatus papillomavirus 2, complete genome | 2620 | _____.c.........g._ | 2632 | 57 |
| NC_001352.1 | Human papillomavirus - 2, complete genome | 4171 | ..gt.........______ | 4159 | 57 |
| NC_008297.1 | Canine papillomavirus 3, complete genome | 6291 | _____.........g.c._ | 6279 | 57 |
| NC_012486.1 | Human papillomavirus type 112, complete genome | 470 | _.a.g........._____ | 482 | 57 |
| NC_001676.1 | Human papillomavirus 54, complete genome | 2911 | ____.........a.g.__ | 2923 | 57 |
| NC_012485.1 | Human papillomavirus type 109, complete genome | 2015 | ______.........tt.. | 2027 | 57 |